Our Publications
The Utah Cancer Registry engages in a large number of studies, some in conjunction with outside researchers and some using internal researchers only. Here is a selection of our publications or publications which we have collaborated on.
2022 Publications
Blanchard A, Gao S, Yoon HJ, Christian B, Durbin EB, Wu XC, Stroup A, Doherty J, Schwartz S, Wiggins C, Coyle L, Penberthy L, Tourassi GD (2022). A Keyword-Enhanced Approach to Handle Class Imbalance in Clinical Text Classification.(Epub ahead of print) IEEE J Biomed Health Inform, PP.
- Part of our collaboration with the Department of Energy
De Angeli K, Gao S, Blanchard A, Durbin EB, Wu XC, Stroup A, Doherty J, Schwartz SM, Wiggins C, Coyle L, Penberthy L, Tourassi G, Yoon HJ. Using ensembles and distillation to optimize the deployment of deep learning models for the classification of electronic cancer pathology reports. JAMIA Open. 2022 Sep 13;5(3):ooac075. doi: 10.1093/jamiaopen/ooac075. PMID: 36110150; PMCID: PMC9469924.
- Part of our collaboration with the Department of Energy
Dood RL, Pappas LM, Collin LJ, Vranes C, Trabert B, Doherty JA. Mortality Patterns of Synchronous Uterine and Ovarian Cancers: A SEER Registry Analysis. Cancer Epidemiology Biomarkers and Prevention. 2022;31(11):2038-45. doi: 10.1158/1055-9965.EPI-22-0587.
- This paper is included in this appendix. We evaluated mortality patterns of ovarian and uterine cancers to determine the degree to which uterine cancer metastatic to the ovary is misdiagnosed as synchronous stage I uterine and ovarian cancer. Observing higher mortality for synchronous stage I uterine and ovarian cancers than for either cancer type alone would imply that some of the synchronous cancers were misdiagnosed. However, we observed lower mortality for synchronous tumors, which was very reassuring as this indicates that misdiagnosis is unlikely, and that patients are receiving the appropriate care.
Gulbahce HE, Downs-Kelly E, Herget KA, Stoddard GJ. The 21-Gene Recurrence Score in Special Histologic Subtypes of Breast Cancer. Arch Pathol Lab Med. 2022 Apr 1;146(4):478-484. doi: 10.5858/arpa.2020-0837-OA. PMID: 34343231.
Joyce DD, Wallis CJD, Luckenbaugh AN, Huelster HL, Zhao Z, Hoffman KE, Huang LC, Koyama T, Conwill R, Goodman M, Hamilton AS, Wu XC, Paddock LE, Stroup A, Cooperberg MR, Hashibe M, Neil BBO, Kaplan SH, Greenfield S, Penson DF, Barocas DA. Sexual function outcomes of radiation and androgen deprivation therapy for localized prostate cancer in men with good baseline function. Prostate cancer and prostatic diseases. 2022;25(2):238-47. doi: 10.1038/s41391-021-00405-5.
Koric A, Chang CP, Mark B, Rowe K, Snyder J, Dodson M, Deshmukh VG, Newman MG, Fraser AM, Smith KR, Date AP, Gren LH, Porucznik CA, Haaland BA, Henry NL, Hashibe M. Cardiovascular disease risk in long-term breast cancer survivors: A population-based cohort study. Cancer. 2022;128(14):2826-35. doi: 10.1002/cncr.34224.
Lawson-Michod KA, Watt MH, Grieshober L, Green SE, Karabegovic L, Derzon S, Owens M, McCarty RD, Doherty JA, Barnard ME. Pathways to ovarian cancer diagnosis: a qualitative study. BMC Women's Health. 2022;22(1). doi: 10.1186/s12905-022-02016-1.
Luckenbaugh AN, Wallis CJD, Huang LC, Wittmann D, Klaassen Z, Zhao Z, Koyama T, Laviana AA, Conwill R, Goodman M, Hamilton AS, Wu XC, Paddock LE, Stroup A, Cooperberg MR, Hashibe M, O'Neil BB, Kaplan SH, Greenfield S, Hoffman KE, Penson DF, Barocas DA. Association between Treatment for Localized Prostate Cancer and Mental Health Outcomes. The Journal of urology. 2022;207(5):1029-37. Epub 20220303. doi: 10.1097/JU.0000000000002370. PubMed PMID: 34978488.
Millar MM, Edwards SL, Herget KA, Orleans B, Ofori-Atta BS, Kirchhoff AC, Carter ME, Nagata M, Sweeney C. Adherence to Guideline-Recommended cancer screening among Utah cancer survivors. Cancer Med. 2022. Epub 20220827. doi: 10.1002/cam4.5168. PubMed PMID: 36029153. Utah Cancer Registry Annual Report 1/1/2022 – 12/31/2022 Contract HHSN261201800016I Task Order HHSN26100002 Appendix 5 – Selected publications
- In collaboration with our state health department, the purpose of this study was to assess what
proportion of cancer survivors are obtaining recommended routine screenings for breast, cervical, and colorectal cancer.
Warner EL, Millar MM, Orleans B, Edwards SL, Carter ME, Vaca Lopez PL, Sweeney C, Kirchhoff AC. Cancer survivors' financial hardship and their caregivers' employment: results from a statewide survey. Journal of cancer survivorship : research and practice. 2022. Epub 20220412. doi: 10.1007/s11764-022-01203-1. PubMed PMID: 35414027.
Yoon HJ, Peluso A, Durbin EB, Wu XC, Stroup A, Doherty J, Schwartz S, Wiggins C, Coyle L, Penberthy L. Automatic information extraction from childhood cancer pathology reports. JAMIA Open. 2022 Jun 16;5(2):ooac049. doi: 10.1093/jamiaopen/ooac049. PMID: 35721398; PMCID: PMC9202570.
- Part of our collaboration with the Department of Energy
Yoon HJ, Stanley C, Christian JB, Klasky HB, Blanchard AE, Durbin EB, Wu XC, Stroup A, Doherty J, Schwartz SM, Wiggins C, Damesyn M, Coyle L, Tourassi GD (2022). Optimal vocabulary selection approaches for privacy-preserving deep NLP model training for information extraction and cancer epidemiology. Cancer Biomark, 33(2), 185-198.
- Part of our collaboration with the Department of Energy
2021 Publications
Bowles TL, Sweeney C, Snyder J, Gygi J, Bott B, Wray D, Yeatman TJ, Sause WT. Impact of rurality on melanoma diagnosis in Utah. Melanoma Management. 2021;8(2). doi: 10.2217/mmt-2020-0023.
De Angeli K, Gao S, Alawad M, Yoon HJ, Schaefferkoetter N, Wu XC, Durbin EB, Doherty J, Stroup A, Coyle L, Penberthy L, Tourassi G. Deep active learning for classifying cancer pathology reports. BMC Bioinformatics. 2021;22(1):113. Epub 20210309. doi: 10.1186/s12859-021-04047-1. PubMed PMID: 33750288; PMCID: PMC7941989.
Gao S, Alawad M, Young MT, Gounley J, Schaefferkoetter N, Yoon HJ, Wu XC, Durbin EB, Doherty J, Stroup A, Coyle L, Tourassi G. Limitations of Transformers on Clinical Text Classification. IEEE J Biomed Health Inform. 2021;25(9):3596-607. Epub 20210903. doi: 10.1109/JBHI.2021.3062322. PubMed PMID: 33635801; PMCID: PMC8387496.
Grossman D, Sweeney C, Doherty JA. The rapid rise in cutaneous melanoma diagnoses. The New England journal of medicine. 2021;384(14):e54. doi: 10.1056/NEJMc2101980. PubMed PMID: 33826834.
Gulbahce HE, White S, Herget KA, Stoddard G, Camp NJ, Buys SS, Sweeney C. 21-gene recurrence score testing utilization among older women from different races: A population-based study. Journal of geriatric oncology. 2021;12(2):206-11. Epub 2020/07/11. doi: 10.1016/j.jgo.2020.06.004. PubMed PMID: 32646620.
Hu Q, Chang CP, Rowe K, Snyder J, Deshmukh V, Newman M, Fraser A, Smith K, Gren LH, Porucznik C, Stanford JB, Gaffney D, Henry NL, Lopez I, Hashibe M. Disparities in Cardiovascular Disease Risk Among Hispanic Breast Cancer Survivors in a Population-Based Cohort. JNCI Cancer Spectr. 2021;5(2):pkab016. Epub 20210215. doi: 10.1093/jncics/pkab016. PubMed PMID: 33889806; PMCID: PMC8052955.
Jacobs AC, Malhotra NR, Purnell SM, Lee YJ, Wolf L, Millar MM, Cartwright PC, Smith BK. Quality improvement education in surgical specialty training: A comparison of Vascular Surgery resident and Urology Resident experiences and attitudes. American journal of surgery. 2021;221(5):993-9. Epub 2020/10/10. doi: 10.1016/j.amjsurg.2020.09.036. PubMed PMID: 33032790.
Jordan SJ, Na R, Weiderpass E, Adami HO, Anderson KE, van den Brandt PA, Brinton LA, Chen C, Cook LS, Doherty JA, Du M, Friedenreich CM, Gierach GL, Goodman MT, Krogh V, Levi F, Lu L, Miller AB, McCann SE, Moysich KB, Negri E, Olson SH, Petruzella S, Palmer JR, Parazzini F, Pike MC, Prizment AE, Rebbeck TR, Reynolds P, Ricceri F, Risch HA, Rohan TE, Sacerdote C, Schouten LJ, Serraino D, Setiawan VW, Shu XO, Sponholtz TR, Spurdle AB, Stolzenberg-Solomon RZ, Trabert B, Wentzensen N, Wilkens LR, Wise LA, Yu H, La Vecchia C, De Vivo I, Xu W, Zeleniuch-Jacquotte A, Webb PM. Pregnancy outcomes and risk of endometrial cancer: A pooled analysis of individual participant data in the Epidemiology of Endometrial Cancer Consortium. International Journal of Cancer. 2021;148(9):2068-78. Epub 2020/10/27. doi: 10.1002/ijc.33360. PubMed PMID: 33105052; PMCID: PMC7969437.
Millar M, Yoder V, Jozwik D, Espinoza J, Lemons D, Jewell C, Sweeney C. Improving cancer registry surveillance through interstate data exchange of electronic pathology reports. Journal of Registry Management. 2021;48(2):59-63.
Yuan Y, Van Dyke AL, Petkov VI, Hussey S, Moravec R, Altekruse SF, Sandoval M, Cress RD, Mueller LM, Mogi A, Hernandez BY, Selk FR, Lynch CF, Tucker TC, Lynch MA, Lefante C, Wu XC, Sweeney C, Doherty JA, Penberthy LS. Pathology Laboratory Policies and Procedures for Releasing Diagnostic Tissue for Cancer Research. Archives of pathology & laboratory medicine. 2021;145(2):222-6. doi: 10.5858/arpa.2019-0474-OA. PubMed PMID: 33501497; PMCID: PMC8135254.
2020 Publications
Anderson C, Kaddas HK, Ou JY, Ramsay JM, Trogdon JG, Kirchhoff AC, Nichols HB. Hospitalization after Adolescent and Young Adult (AYA) Cancer: A population-based study in Utah. Cancer Epidemiology Biomarkers and Prevention. 2020;29(2):336-42. doi: 10.1158/1055-9965.EPI-19-1229.
Aylward A, Park J, Abdelaziz S, Hunt JP, Buchmann LO, Cannon RB, Rowe K, Snyder J, Deshmukh V, Newman M, Wan Y, Fraser A, Smith K, Lloyd S, Hitchcock Y, Hashibe M, Monroe MM. Individualized prediction of late-onset dysphagia in head and neck cancer survivors. Head and Neck. 2020;42(4):708-18. doi: 10.1002/hed.26039.
Babic A, Sasamoto N, Rosner BA, Tworoger SS, Jordan SJ, Risch HA, Harris HR, Rossing MA, Doherty JA, Fortner RT, Chang-Claude J, Goodman MT, Thompson PJ, Moysich KB, Ness RB, Kjaer SK, Jensen A, Schildkraut JM, Titus LJ, Cramer DW, Bandera EV, Qin B, Sieh W, McGuire V, Sutphen R, Pearce CL, Wu AH, Pike M, Webb PM, Modugno F, Terry KL. Association Between Breastfeeding and Ovarian Cancer Risk. JAMA Oncol. 2020;6(6):e200421. Epub 2020/04/03. doi: 10.1001/jamaoncol.2020.0421. PubMed PMID: 32239218; PMCID: PMC7118668.
Chow CJ, Millar MM, Lopez AM. Gender Discrimination Among Academic Physicians. Womens Health Rep (New Rochelle). 2020;1(1):203-11. Epub 2020/08/14. doi: 10.1089/whr.2020.0031. PubMed PMID: 32789303; PMCID: PMC7416626.
Demanelis K, Jasmine F, Chen LS, Chernoff M, Tong L, Delgado D, Zhang C, Shinkle J, Sabarinathan M, Lin H, Ramirez E, Oliva M, Kim-Hellmuth S, Stranger BE, Lai TP, Aviv A, Ardlie KG, Aguet F, Ahsan H, Consortium GT, Doherty JA, Kibriya MG, Pierce BL. Determinants of telomere length across human tissues. Science. 2020;369(6509). Epub 2020/09/12. doi: 10.1126/science.aaz6876. PubMed PMID: 32913074; PMCID: PMC8108546.
Gallicchio L, Elena JW, Rogers S, S. F, Carter M, Hamilton AS, Hastert T, Hunter LL, Li L, Lynch CF, Milam J, Millar M, Modjeski D, Paddock LE, Reed AR, Moses L, Stroup AM, Sweeney C, Trapido EJ, West MM, Wu X-C, Helzlsouer KJ. Utilizing SEER cancer registries for population-based cancer survivor epidemiologic studies: a feasibility study. Cancer Epidemiol Biomarkers Prev. 2020;29(9):1699-709. Epub 2020/07/12. doi: 10.1158/1055-9965.EPI-20-0153; PMCID: 7484198.
Grieshober L, Graw S, Barnett MJ, Thornquist MD, Goodman GE, Chen C, Koestler DC, Marsit CJ, Doherty JA. AHRR methylation in heavy smokers: associations with smoking, lung cancer risk, and lung cancer mortality. BMC Cancer. 2020;20(1):905. Epub 2020/09/24. doi: 10.1186/s12885-020-07407-x. PubMed PMID: 32962699; PMCID: PMC7510160.
Hanson HA, Leiser CL, Madsen MJ, Gardner J, Knight S, Cessna M, Sweeney C, Doherty JA, Smith KR, Bernard PS, Camp NJ. Family study designs informed by tumor heterogeneity and multi-cancer pleiotropies: The power of the Utah population database. Cancer Epidemiology Biomarkers and Prevention. 2020;29(4):807-15. doi: 10.1158/1055-9965.EPI-19-0912.
Huelster HL, Laviana AA, Joyce DD, Huang LC, Zhao Z, Koyama T, Hoffman KE, Conwill R, Goodman M, Hamilton AS, Wu XC, Paddock LE, Stroup A, Cooperberg M, Hashibe M, O'Neil BB, Kaplan SH, Greenfield S, Penson DF, Barocas DA. Radiotherapy after radical prostatectomy: Effect of timing of postprostatectomy radiation on functional outcomes. Urologic Oncology: Seminars and Original Investigations. 2020;38(12):930.e23-.e32. doi: 10.1016/j.urolonc.2020.06.022.
Hummel K, Millar M, Olson L. Q-Tip: Using a Structured Quality Improvement Process to Generate High-Quality Family Satisfaction Data. Am J Med Qual. 2020;35(3):282. Epub 2020/06/09. doi: 10.1177/1062860620912926. PubMed PMID: 32510994.
Hummel K, Presson AP, Millar MM, Larsen G, Kadish H, Olson LM. An Assessment of Clinical and System Drivers of Family Satisfaction in the PICU. Pediatr Crit Care Med. 2020;21(10):e888-e97. Epub 2020/06/17. doi: 10.1097/PCC.0000000000002394. PubMed PMID: 32541372; PMCID: PMC7836021.
Hyde MA, Grossman D, Wu YP, Buys S, Gren LH, Hashibe M. Vitamin D, melanoma risk, and tumor thickness in PLCO cancer screening trial patients. JAAPA : official journal of the American Academy of Physician Assistants. 2020;33(6):35-41. doi: 10.1097/01.JAA.0000662388.18867.42.
Kohring JM, Harrast JJ, Stotts AK, Zhang C, Millar MM, Presson AP, Saltzman CL. Resident Independence Performing Common Orthopaedic Procedures at the End of Training: Perspective of the Graduated Resident. J Bone Joint Surg Am. 2020;102(1):e2. Epub 2019/10/01. doi: 10.2106/JBJS.18.01469. PubMed PMID: 31567668.
Lee AW, Wu AH, Wiensch A, Mukherjee B, Terry KL, Harris HR, Carney ME, Jensen A, Cramer DW, Berchuck A, Doherty JA, Modugno F, Goodman MT, Alimujiang A, Rossing MA, Cushing-Haugen KL, Bandera EV, Thompson PJ, Kjaer SK, Hogdall E, Webb PM, Huntsman DG, Moysich KB, Lurie G, Ness RB, Stram DO, Roman L, Pike MC, Pearce CL, Ovarian Cancer Association C. Estrogen Plus Progestin Hormone Therapy and Ovarian Cancer: A Complicated Relationship Explored. Epidemiology. 2020;31(3):402-8. Epub 2020/02/07. doi: 10.1097/EDE.0000000000001175. PubMed PMID: 32028322; PMCID: PMC7584395.
Malhotra NR, Lee YJ, Millar MM, Cartwright PC, Smith BK. Experiences With Quality Improvement in Training: A National Survey of Urology Residents. Urology. 2020;145:83-9. Epub 2020/08/01. doi: 10.1016/j.urology.2020.06.075. PubMed PMID: 32735977.
Manichaikul A, Peres LC, Wang XQ, Barnard ME, Chyn D, Sheng X, Du Z, Tyrer J, Dennis J, Schwartz AG, Cote ML, Peters E, Moorman PG, Bondy M, Barnholtz-Sloan JS, Terry P, Alberg AJ, Bandera EV, Funkhouser E, Wu AH, Pearce CL, Pike M, Setiawan VW, Haiman CA, African American Breast Cancer C, African Ancestry Prostate Cancer C, Palmer JR, LeMarchand L, Wilkens LR, Berchuck A, Doherty JA, Modugno F, Ness R, Moysich K, Karlan BY, Whittemore AS, McGuire V, Sieh W, Lawrenson K, Gayther S, Sellers TA, Pharoah P, Schildkraut JM, African American Cancer Epidemiology S, the Ovarian Cancer Association C. Identification of novel epithelial ovarian cancer loci in women of African ancestry. International Journal of Cancer. 2020;146(11):2987-98. Epub 2019/08/31. doi: 10.1002/ijc.32653. PubMed PMID: 31469419; PMCID: PMC7523187.
Millstein J, Budden T, Goode EL, Anglesio MS, Talhouk A, Intermaggio MP, Leong HS, Chen S, Elatre W, Gilks B, Nazeran T, Volchek M, Bentley RC, Wang C, Chiu DS, Kommoss S, Leung SCY, Senz J, Lum A, Chow V, Sudderuddin H, Mackenzie R, George J, Group A, Fereday S, Hendley J, Traficante N, Steed H, Koziak JM, Kobel M, McNeish IA, Goranova T, Ennis D, Macintyre G, Silva De Silva D, Ramon YCT, Garcia-Donas J, Hernando Polo S, Rodriguez GC, Cushing-Haugen KL, Harris HR, Greene CS, Zelaya RA, Behrens S, Fortner RT, Sinn P, Herpel E, Lester J, Lubinski J, Oszurek O, Toloczko A, Cybulski C, Menkiszak J, Pearce CL, Pike MC, Tseng C, Alsop J, Rhenius V, Song H, Jimenez-Linan M, Piskorz AM, Gentry-Maharaj A, Karpinskyj C, Widschwendter M, Singh N, Kennedy CJ, Sharma R, Harnett PR, Gao B, Johnatty SE, Sayer R, Boros J, Winham SJ, Keeney GL, Kaufmann SH, Larson MC, Luk H, Hernandez BY, Thompson PJ, Wilkens LR, Carney ME, Trabert B, Lissowska J, Brinton L, Sherman ME, Bodelon C, Hinsley S, Lewsley LA, Glasspool R, Banerjee SN, Stronach EA, Haluska P, Ray-Coquard I, Mahner S, Winterhoff B, Slamon D, Levine DA, Kelemen LE, Benitez J, Chang-Claude J, Gronwald J, Wu AH, Menon U, Goodman MT, Schildkraut JM, Wentzensen N, Brown R, Berchuck A, Chenevix-Trench G, deFazio A, Gayther SA, Garcia MJ, Henderson MJ, Rossing MA, Beeghly-Fadiel A, Fasching PA, Orsulic S, Karlan BY, Konecny GE, Huntsman DG, Bowtell DD, Brenton JD, Doherty JA, Pharoah PDP, Ramus SJ. Prognostic gene expression signature for high-grade serous ovarian cancer. Ann Oncol. 2020;31(9):1240-50. Epub 2020/05/31. doi: 10.1016/j.annonc.2020.05.019. PubMed PMID: 32473302; PMCID: PMC7484370.
Purnell SM, Wolf L, Millar MM, Smith BK. A National Survey of Integrated Vascular Surgery Residents' Experiences With and Attitudes About Quality Improvement During Residency. J Surg Educ. 2020;77(1):158-65. Epub 2019/12/08. doi: 10.1016/j.jsurg.2019.09.003. PubMed PMID: 31810901.
Reisz PA, Laviana AA, Zhao Z, Huang LC, Koyama T, Conwill R, Hoffman K, Goodman M, Hamilton AS, Wu XC, Paddock LE, Stroup A, Cooperberg MR, Hashibe M, O'Neil BB, Kaplan SH, Greenfield S, Penson DF, Barocas DA. Assessing the Quality of Surgical Care for Clinically Localized Prostate Cancer: Results from the CEASAR Study. The Journal of urology. 2020;204(6):1236-41. doi: 10.1097/JU.0000000000001198.
Talhouk A, George J, Wang C, Budden T, Tan TZ, Chiu DS, Kommoss S, Leong HS, Chen S, Intermaggio MP, Gilks B, Nazeran TM, Volchek M, Elatre W, Bentley RC, Senz J, Lum A, Chow V, Sudderuddin H, Mackenzie R, Leong SCY, Liu G, Johnson D, Chen B, Group A, Alsop J, Banerjee SN, Behrens S, Bodelon C, Brand AH, Brinton L, Carney ME, Chiew YE, Cushing-Haugen KL, Cybulski C, Ennis D, Fereday S, Fortner RT, Garcia-Donas J, Gentry-Maharaj A, Glasspool R, Goranova T, Greene CS, Haluska P, Harris HR, Hendley J, Hernandez BY, Herpel E, Jimenez-Linan M, Karpinskyj C, Kaufmann SH, Keeney GL, Kennedy CJ, Kobel M, Koziak JM, Larson MC, Lester J, Lewsley LA, Lissowska J, Lubinski J, Luk H, Macintyre G, Mahner S, McNeish IA, Menkiszak J, Nevins N, Osorio A, Oszurek O, Palacios J, Hinsley S, Pearce CL, Pike MC, Piskorz AM, Ray-Coquard I, Rhenius V, Rodriguez-Antona C, Sharma R, Sherman ME, De Silva D, Singh N, Sinn P, Slamon D, Song H, Steed H, Stronach EA, Thompson PJ, Toloczko A, Trabert B, Traficante N, Tseng CC, Widschwendter M, Wilkens LR, Winham SJ, Winterhoff B, Beeghly-Fadiel A, Benitez J, Berchuck A, Brenton JD, Brown R, Chang-Claude J, Chenevix-Trench G, deFazio A, Fasching PA, Garcia MJ, Gayther SA, Goodman MT, Gronwald J, Henderson MJ, Karlan BY, Kelemen LE, Menon U, Orsulic S, Pharoah PDP, Wentzensen N, Wu AH, Schildkraut JM, Rossing MA, Konecny GE, Huntsman DG, Huang RY, Goode EL, Ramus SJ, Doherty JA, Bowtell DD, Anglesio MS. Development and Validation of the Gene Expression Predictor of High-grade Serous Ovarian Carcinoma Molecular SubTYPE (PrOTYPE). Clin Cancer Res. 2020;26(20):5411-23. Epub 2020/06/20. doi: 10.1158/1078-0432.CCR-20-0103. PubMed PMID: 32554541; PMCID: PMC7572656.
Yoon HJ, Klasky HB, Gounley JP, Alawad M, Gao S, Durbin EB, Wu XC, Stroup A, Doherty J, Coyle L, Penberthy L, Blair Christian J, Tourassi GD. Accelerated training of bootstrap aggregation-based deep information extraction systems from cancer pathology reports. J Biomed Inform. 2020;110:103564. Epub 2020/09/13. doi: 10.1016/j.jbi.2020.103564. PubMed PMID: 32919043.
2019 Publications
Aylward A, Abdelaziz S, Hunt JP, Buchmann LO, Cannon RB, Lloyd S, Hitchcock Y, Hashibe M, Monroe MM. Rates of Dysphagia-Related Diagnoses in Long-Term Survivors of Head and Neck Cancers. Otolaryngology - Head and Neck Surgery (United States). 2019;161(4):643-51. doi: 10.1177/0194599819850154.
Bodelon C, Killian JK, Sampson JN, Anderson WF, Matsuno R, Brinton LA, Lissowska J, Anglesio MS, Bowtell DDL, Doherty JA, Ramus SJ, Talhouk A, Sherman ME, Wentzensen N. Molecular Classification of Epithelial Ovarian Cancer Based on Methylation Profiling: Evidence for Survival Heterogeneity. Clin Cancer Res. 2019;25(19):5937-46. Epub 2019/05/31. doi: 10.1158/1078-0432.CCR-18-3720. PubMed PMID: 31142506; PMCID: PMC6774865.
Delgado DA, Zhang C, Gleason K, Demanelis K, Chen LS, Gao J, Roy S, Shinkle J, Sabarinathan M, Argos M, Tong L, Ahmed A, Islam T, Rakibuz-Zaman M, Sarwar G, Shahriar H, Rahman M, Yunus M, Doherty JA, Jasmine F, Kibriya MG, Ahsan H, Pierce BL. The contribution of parent-to-offspring transmission of telomeres to the heritability of telomere length in humans. Hum Genet. 2019;138(1):49-60. Epub 2018/12/12. doi: 10.1007/s00439-018-1964-2. PubMed PMID: 30536049; PMCID: PMC6616344.
Garvin JH, Herget KA, Hashibe M, Kirchhoff AC, Hawley CW, Bolton D, Sweeney C. Linkage between Utah All Payers Claims Database and Central Cancer Registry. Health Serv Res. 2019;54(3):707-13. Epub 2019/01/25. doi: 10.1111/1475-6773.13114. PubMed PMID: 30675913; PMCID: PMC6505409.Greenberg S, Buys SS, Edwards SL, Espinel W, Fraser A, Gammon A, Hafen B, Herget KA, Kohlmann W, Roundy C, Sweeney C. Population prevalence of individuals meeting criteria for hereditary breast and ovarian cancer testing. Cancer Med. 2019;8(15):6789-98. Epub 2019/09/19. doi: 10.1002/cam4.2534. PubMed PMID: 31531966; PMCID: PMC6825998.
Grant DJ, Manichaikul A, Alberg AJ, Bandera EV, Barnholtz-Sloan J, Bondy M, Cote ML, Funkhouser E, Moorman PG, Peres LC, Peters ES, Schwartz AG, Terry PD, Wang XQ, Keku TO, Hoyo C, Berchuck A, Sandler DP, Taylor JA, O'Brien KM, Velez Edwards DR, Edwards TL, Beeghly-Fadiel A, Wentzensen N, Pearce CL, Wu AH, Whittemore AS, McGuire V, Sieh W, Rothstein JH, Modugno F, Ness R, Moysich K, Rossing MA, Doherty JA, Sellers TA, Permuth-Way JB, Monteiro AN, Levine DA, Setiawan VW, Haiman CA, LeMarchand L, Wilkens LR, Karlan BY, Menon U, Ramus S, Gayther S, Gentry-Maharaj A, Terry KL, Cramer DW, Goode EL, Larson MC, Kaufmann SH, Cannioto R, Odunsi K, Etter JL, Huang RY, Bernardini MQ, Tone AA, May T, Goodman MT, Thompson PJ, Carney ME, Tworoger SS, Poole EM, Lambrechts D, Vergote I, Vanderstichele A, Van Nieuwenhuysen E, Anton-Culver H, Ziogas A, Brenton JD, Bjorge L, Salvensen HB, Kiemeney LA, Massuger L, Pejovic T, Bruegl A, Moffitt M, Cook L, Le ND, Brooks-Wilson A, Kelemen LE, Pharoah PDP, Song H, Campbell I, Eccles D, DeFazio A, Kennedy CJ, Schildkraut JM. Evaluation of vitamin D biosynthesis and pathway target genes reveals UGT2A1/2 and EGFR polymorphisms associated with epithelial ovarian cancer in African American Women. Cancer Med. 2019;8(5):2503-13. Epub 2019/04/20. doi: 10.1002/cam4.1996. PubMed PMID: 31001917; PMCID: PMC6536963.
Harris HR, Cushing-Haugen KL, Webb PM, Nagle CM, Jordan SJ, Australian Ovarian Cancer Study G, Risch HA, Rossing MA, Doherty JA, Goodman MT, Modugno F, Ness RB, Moysich KB, Kjaer SK, Hogdall E, Jensen A, Schildkraut JM, Berchuck A, Cramer DW, Bandera EV, Rodriguez L, Wentzensen N, Kotsopoulos J, Narod SA, McLaughlin JR, Anton-Culver H, Ziogas A, Pearce CL, Wu AH, Lindstrom S, Terry KL. Association between genetically predicted polycystic ovary syndrome and ovarian cancer: a Mendelian randomization study. International journal of epidemiology. 2019;48(3):822-30. Epub 2019/06/19. doi: 10.1093/ije/dyz113. PubMed PMID: 31211375; PMCID: PMC6659359.
Hashibe M, Ou JY, Herget K, Bolton D, McPherson J, Hawley C, Garvin J, Doherty JA, Sweeney C. Feasibility of Capturing Cancer Treatment Data in the Utah All-Payer Claims Database. JCO clinical cancer informatics. 2019;3:1-10. Epub 2019/11/23. doi: 10.1200/CCI.19.00027. PubMed PMID: 31756128; PMCID: PMC6882521.
Kawakita D, Lee YCA, Gren LH, Buys SS, La Vecchia C, Hashibe M. Fiber intake and the risk of head and neck cancer in the prostate, lung, colorectal and ovarian (PLCO) cohort. International Journal of Cancer. 2019;145(9):2342-8. doi: 10.1002/ijc.32162.
Kim S, Wang M, Tyrer JP, Jensen A, Wiensch A, Liu G, Lee AW, Ness RB, Salvatore M, Tworoger SS, Whittemore AS, Anton-Culver H, Sieh W, Olson SH, Berchuck A, Goode EL, Goodman MT, Doherty JA, Chenevix-Trench G, Rossing MA, Webb PM, Giles GG, Terry KL, Ziogas A, Fortner RT, Menon U, Gayther SA, Wu AH, Song H, Brooks-Wilson A, Bandera EV, Cook LS, Cramer DW, Milne RL, Winham SJ, Kjaer SK, Modugno F, Thompson PJ, Chang-Claude J, Harris HR, Schildkraut JM, Le ND, Wentzensen N, Trabert B, Hogdall E, Huntsman D, Pike MC, Pharoah PDP, Pearce CL, Mukherjee B. A comprehensive gene-environment interaction analysis in Ovarian Cancer using genome-wide significant common variants. International Journal of Cancer. 2019;144(9):2192-205. Epub 2018/12/01. doi: 10.1002/ijc.32029. PubMed PMID: 30499236; PMCID: PMC6399057.
Lawrenson K, Song F, Hazelett DJ, Kar SP, Tyrer J, Phelan CM, Corona RI, Rodriguez-Malave NI, Seo JH, Adler E, Coetzee SG, Segato F, Fonseca MAS, Amos CI, Carney ME, Chenevix-Trench G, Choi J, Doherty JA, Jia W, Jin GJ, Kim BG, Le ND, Lee J, Li L, Lim BK, Adenan NA, Mizuno M, Park B, Pearce CL, Shan K, Shi Y, Shu XO, Sieh W, Australian Ovarian Cancer Study G, Thompson PJ, Wilkens LR, Wei Q, Woo YL, Yan L, Karlan BY, Freedman ML, Noushmehr H, Goode EL, Berchuck A, Sellers TA, Teo SH, Zheng W, Matsuo K, Park S, Chen K, Pharoah PDP, Gayther SA, Goodman MT. Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women. Gynecol Oncol. 2019;153(2):343-55. Epub 2019/03/23. doi: 10.1016/j.ygyno.2019.02.023. PubMed PMID: 30898391; PMCID: PMC6754211.
Millar MM, Elena JW, Gallicchio L, Edwards SL, Carter ME, Herget KA, Sweeney C. The feasibility of web surveys for obtaining patient-reported outcomes from cancer survivors: a randomized experiment comparing survey modes and brochure enclosures. BMC medical research methodology. 2019;19(1):208. Epub 2019/11/16. doi: 10.1186/s12874-019-0859-9. PubMed PMID: 31730474; PMCID: PMC6858678.
Millar MM, Kinney AY, Camp NJ, Cannon-Albright LA, Hashibe M, Penson DF, Kirchhoff AC, Neklason DW, Gilsenan AW, Dieck GS, Stroup AM, Edwards SL, Bateman C, Carter ME, Sweeney C. Predictors of Response Outcomes for Research Recruitment Through a Central Cancer Registry: Evidence From 17 Population-Based Studies. American journal of epidemiology. 2019;188(5):928-39. Epub 2019/01/29. doi: 10.1093/aje/kwz011. PubMed PMID: 30689685; PMCID: PMC6494669.
Minlikeeva AN, Cannioto R, Jensen A, Kjaer SK, Jordan SJ, Diergaarde B, Szender JB, Odunsi K, Almohanna H, Mayor P, Starbuck K, Zsiros E, Bandera EV, Cramer DW, Doherty JA, DeFazio A, Australian Ovarian Cancer Study G, Edwards R, Goode EL, Goodman MT, Hogdall E, Matsuo K, Mizuno M, Nagle CM, Ness RB, Paddock LE, Pearce CL, Risch HA, Rossing MA, Terry KL, Wu AH, Modugno F, Webb PM, Moysich KB, Ovarian Cancer Association C. Joint exposure to smoking, excessive weight, and physical inactivity and survival of ovarian cancer patients, evidence from the Ovarian Cancer Association Consortium. Cancer Causes Control. 2019;30(5):537-47. Epub 2019/03/25. doi: 10.1007/s10552-019-01157-3. PubMed PMID: 30905014; PMCID: PMC6614876.
Palmer EL, Hassanpour S, Higgins J, Doherty JA, Onega T. Building a tobacco user registry by extracting multiple smoking behaviors from clinical notes. BMC Med Inform Decis Mak. 2019;19(1):141. Epub 2019/07/26. doi: 10.1186/s12911-019-0863-3. PubMed PMID: 31340796; PMCID: PMC6657102.
Palmer EL, Higgins J, Hassanpour S, Sargent J, Robinson CM, Doherty JA, Onega T. Assessing data availability and quality within an electronic health record system through external validation against an external clinical data source. BMC Med Inform Decis Mak. 2019;19(1):143. Epub 2019/07/28. doi: 10.1186/s12911-019-0864-2. PubMed PMID: 31345210; PMCID: PMC6657182.
2018 Publications
Abdulsalam A, Garvin JH, Redd A, Carter ME, Sweeney C, Meystre SM. Automated Extraction and Classification of Cancer Stage Mentions fromUnstructured Text Fields in a Central Cancer Registry. AMIA Jt Summits Transl Sci Proc. 2018;2017:16-25. Epub 2018/06/12. PubMed PMID: 29888032; PMCID: 5961766.
Dixon-Suen SC, Nagle CM, Thrift AP, Pharoah PDP, Ewing A, Pearce CL, Zheng W, Australian Ovarian Cancer Study G, Chenevix-Trench G, Fasching PA, Beckmann MW, Lambrechts D, Vergote I, Lambrechts S, Van Nieuwenhuysen E, Rossing MA, Doherty JA, Wicklund KG, Chang-Claude J, Jung AY, Moysich KB, Odunsi K, Goodman MT, Wilkens LR, Thompson PJ, Shvetsov YB, Dork T, Park-Simon TW, Hillemanns P, Bogdanova N, Butzow R, Nevanlinna H, Pelttari LM, Leminen A, Modugno F, Ness RB, Edwards RP, Kelley JL, Heitz F, du Bois A, Harter P, Schwaab I, Karlan BY, Lester J, Orsulic S, Rimel BJ, Kjaer SK, Hogdall E, Jensen A, Goode EL, Fridley BL, Cunningham JM, Winham SJ, Giles GG, Bruinsma F, Milne RL, Southey MC, Hildebrandt MAT, Wu X, Lu KH, Liang D, Levine DA, Bisogna M, Schildkraut JM, Berchuck A, Cramer DW, Terry KL, Bandera EV, Olson SH, Salvesen HB, Thomsen LCV, Kopperud RK, Bjorge L, Kiemeney LA, Massuger L, Pejovic T, Bruegl A, Cook LS, Le ND, Swenerton KD, Brooks-Wilson A, Kelemen LE, Lubinski J, Huzarski T, Gronwald J, Menkiszak J, Wentzensen N, Brinton L, Yang H, Lissowska J, Hogdall CK, Lundvall L, Song H, Tyrer JP, Campbell I, Eccles D, Paul J, Glasspool R, Siddiqui N, Whittemore AS, Sieh W, McGuire V, Rothstein JH, Narod SA, Phelan C, Risch HA, McLaughlin JR, Anton-Culver H, Ziogas A, Menon U, Gayther SA, Ramus SJ, Gentry-Maharaj A, Wu AH, Pike MC, Tseng CC, Kupryjanczyk J, Dansonka-Mieszkowska A, Budzilowska A, Rzepecka IK, Webb PM, Ovarian Cancer Association C. Adult height is associated with increased risk of ovarian cancer: a Mendelian randomisation study. Br J Cancer. 2018;118(8):1123-9. Epub 2018/03/21. doi: 10.1038/s41416-018-0011-3. PubMed PMID: 29555990; PMCID: PMC5931085.
Doherty JA, Grieshober L, Houck JR, Barnett MJ, De Dieu Tapsoba J, Thornquist MD, Wang CY, Goodman GE, Chen C. Nested case-control study of telomere length and lung cancer risk among heavy smokers in the beta-Carotene and Retinol Efficacy Trial. Br J Cancer. 2018;118(11):1513-7. Epub 2018/04/20. doi: 10.1038/s41416-018-0075-0. PubMed PMID: 29670295; PMCID: PMC5988820.
Doherty JA, Grieshober L, Houck JR, Barnett MJ, Tapsoba JD, Thornquist M, Wang CY, Goodman GE, Chen C. Telomere Length and Lung Cancer Mortality among Heavy Smokers. Cancer Epidemiology, Biomarkers & Prevention. 2018;27(7):829-37. Epub 2018/05/11. doi: 10.1158/1055-9965.EPI-17-1183. PubMed PMID: 29743162; PMCID: PMC6035074.
Earp M, Tyrer JP, Winham SJ, Lin HY, Chornokur G, Dennis J, Aben KKH, Anton-Culver H, Antonenkova N, Bandera EV, Bean YT, Beckmann MW, Bjorge L, Bogdanova N, Brinton LA, Brooks-Wilson A, Bruinsma F, Bunker CH, Butzow R, Campbell IG, Carty K, Chang-Claude J, Cook LS, Cramer DW, Cunningham JM, Cybulski C, Dansonka-Mieszkowska A, Despierre E, Doherty JA, Dork T, du Bois A, Durst M, Easton DF, Eccles DM, Edwards RP, Ekici AB, Fasching PA, Fridley BL, Gentry-Maharaj A, Giles GG, Glasspool R, Goodman MT, Gronwald J, Harter P, Hein A, Heitz F, Hildebrandt MAT, Hillemanns P, Hogdall CK, Hogdall E, Hosono S, Iversen ES, Jakubowska A, Jensen A, Ji BT, Jung AY, Karlan BY, Kellar M, Kiemeney LA, Kiong Lim B, Kjaer SK, Krakstad C, Kupryjanczyk J, Lambrechts D, Lambrechts S, Le ND, Lele S, Lester J, Levine DA, Li Z, Liang D, Lissowska J, Lu K, Lubinski J, Lundvall L, Massuger L, Matsuo K, McGuire V, McLaughlin JR, McNeish I, Menon U, Milne RL, Modugno F, Moysich KB, Ness RB, Nevanlinna H, Odunsi K, Olson SH, Orlow I, Orsulic S, Paul J, Pejovic T, Pelttari LM, Permuth JB, Pike MC, Poole EM, Rosen B, Rossing MA, Rothstein JH, Runnebaum IB, Rzepecka IK, Schernhammer E, Schwaab I, Shu XO, Shvetsov YB, Siddiqui N, Sieh W, Song H, Southey MC, Spiewankiewicz B, Sucheston-Campbell L, Tangen IL, Teo SH, Terry KL, Thompson PJ, Thomsen L, Tworoger SS, van Altena AM, Vergote I, Vestrheim Thomsen LC, Vierkant RA, Walsh CS, Wang-Gohrke S, Wentzensen N, Whittemore AS, Wicklund KG, Wilkens LR, Woo YL, Wu AH, Wu X, Xiang YB, Yang H, Zheng W, Ziogas A, Lee AW, Pearce CL, Berchuck A, Schildkraut JM, Ramus SJ, Monteiro ANA, Narod SA, Sellers TA, Gayther SA, Kelemen LE, Chenevix-Trench G, Risch HA, Pharoah PDP, Goode EL, Phelan CM. Variants in genes encoding small GTPases and association with epithelial ovarian cancer susceptibility. PLoS One. 2018;13(7):e0197561. Epub 2018/07/07. doi: 10.1371/journal.pone.0197561. PubMed PMID: 29979793; PMCID: PMC6034790.
Grieshober L, Graw S, Barnett MJ, Thornquist MD, Goodman GE, Chen C, Koestler DC, Marsit CJ, Doherty JA. Methylation-derived Neutrophil-to-Lymphocyte Ratio and Lung Cancer Risk in Heavy Smokers. Cancer prevention research (Philadelphia, Pa). 2018;11(11):727-34. Epub 2018/09/27. doi: 10.1158/1940-6207.CAPR-18-0111. PubMed PMID: 30254071; PMCID: PMC6214718.
Harrington LX, Way GP, Doherty JA, Greene CS. Functional network community detection can disaggregate and filter multiple underlying pathways in enrichment analyses. Pac Symp Biocomput. 2018;23:157-67. Epub 2017/12/09. PubMed PMID: 29218878; PMCID: PMC5760988.
Harris HR, Babic A, Webb PM, Nagle CM, Jordan SJ, Risch HA, Rossing MA, Doherty JA, Goodman MT, Modugno F, Ness RB, Moysich KB, Kjaer SK, Hogdall E, Jensen A, Schildkraut JM, Berchuck A, Cramer DW, Bandera EV, Wentzensen N, Kotsopoulos J, Narod SA, Phelan CM, McLaughlin JR, Anton-Culver H, Ziogas A, Pearce CL, Wu AH, Terry KL, Ovarian Cancer Association C, Australian Ovarian Cancer Study G. Polycystic Ovary Syndrome, Oligomenorrhea, and Risk of Ovarian Cancer Histotypes: Evidence from the Ovarian Cancer Association Consortium. Cancer Epidemiology, Biomarkers & Prevention. 2018;27(2):174-82. Epub 2017/11/17. doi: 10.1158/1055-9965.EPI-17-0655. PubMed PMID: 29141849; PMCID: PMC5877463.
Hashibe M, Kirchhoff AC, Kepka D, Kim J, Millar M, Sweeney C, Herget K, Monroe M, Henry NL, Lopez AM, Mooney K. Disparities in cancer survival and incidence by metropolitan versus rural residence in Utah. Cancer Med. 2018;7(4):1490-7. Epub 2018/03/14. doi: 10.1002/cam4.1382. PubMed PMID: 29533005; PMCID: 5911626.
Ji X, Bosse Y, Landi MT, Gui J, Xiao X, Qian D, Joubert P, Lamontagne M, Li Y, Gorlov I, de Biasi M, Han Y, Gorlova O, Hung RJ, Wu X, McKay J, Zong X, Carreras-Torres R, Christiani DC, Caporaso N, Johansson M, Liu G, Bojesen SE, Le Marchand L, Albanes D, Bickeboller H, Aldrich MC, Bush WS, Tardon A, Rennert G, Chen C, Teare MD, Field JK, Kiemeney LA, Lazarus P, Haugen A, Lam S, Schabath MB, Andrew AS, Shen H, Hong YC, Yuan JM, Bertazzi PA, Pesatori AC, Ye Y, Diao N, Su L, Zhang R, Brhane Y, Leighl N, Johansen JS, Mellemgaard A, Saliba W, Haiman C, Wilkens L, Fernandez-Somoano A, Fernandez-Tardon G, van der Heijden E, Kim JH, Dai J, Hu Z, Davies MPA, Marcus MW, Brunnstrom H, Manjer J, Melander O, Muller DC, Overvad K, Trichopoulou A, Tumino R, Doherty J, Goodman GE, Cox A, Taylor F, Woll P, Bruske I, Manz J, Muley T, Risch A, Rosenberger A, Grankvist K, Johansson M, Shepherd F, Tsao MS, Arnold SM, Haura EB, Bolca C, Holcatova I, Janout V, Kontic M, Lissowska J, Mukeria A, Ognjanovic S, Orlowski TM, Scelo G, Swiatkowska B, Zaridze D, Bakke P, Skaug V, Zienolddiny S, Duell EJ, Butler LM, Koh WP, Gao YT, Houlston R, McLaughlin J, Stevens V, Nickle DC, Obeidat M, Timens W, Zhu B, Song L, Artigas MS, Tobin MD, Wain LV, Gu F, Byun J, Kamal A, Zhu D, Tyndale RF, Wei WQ, Chanock S, Brennan P, Amos CI. Identification of susceptibility pathways for the role of chromosome 15q25.1 in modifying lung cancer risk. Nat Commun. 2018;9(1):3221. Epub 2018/08/15. doi: 10.1038/s41467-018-05074-y. PubMed PMID: 30104567; PMCID: PMC6089967.
Kelemen LE, Earp M, Fridley BL, Chenevix-Trench G, Australian Ovarian Cancer Study G, Fasching PA, Beckmann MW, Ekici AB, Hein A, Lambrechts D, Lambrechts S, Van Nieuwenhuysen E, Vergote I, Rossing MA, Doherty JA, Chang-Claude J, Behrens S, Moysich KB, Cannioto R, Lele S, Odunsi K, Goodman MT, Shvetsov YB, Thompson PJ, Wilkens LR, Dork T, Antonenkova N, Bogdanova N, Hillemanns P, Runnebaum IB, du Bois A, Harter P, Heitz F, Schwaab I, Butzow R, Pelttari LM, Nevanlinna H, Modugno F, Edwards RP, Kelley JL, Ness RB, Karlan BY, Lester J, Orsulic S, Walsh C, Kjaer SK, Jensen A, Cunningham JM, Vierkant RA, Giles GG, Bruinsma F, Southey MC, Hildebrandt MAT, Liang D, Lu K, Wu X, Sellers TA, Levine DA, Schildkraut JM, Iversen ES, Terry KL, Cramer DW, Tworoger SS, Poole EM, Bandera EV, Olson SH, Orlow I, Vestrheim Thomsen LC, Bjorge L, Krakstad C, Tangen IL, Kiemeney LA, Aben KKH, Massuger L, van Altena AM, Pejovic T, Bean Y, Kellar M, Cook LS, Le ND, Brooks-Wilson A, Gronwald J, Cybulski C, Jakubowska A, Lubinski J, Wentzensen N, Brinton LA, Lissowska J, Hogdall E, Engelholm SA, Hogdall C, Lundvall L, Nedergaard L, Pharoah PDP, Dicks E, Song H, Tyrer JP, McNeish I, Siddiqui N, Carty K, Glasspool R, Paul J, Campbell IG, Eccles D, Whittemore AS, McGuire V, Rothstein JH, Sieh W, Narod SA, Phelan CM, McLaughlin JR, Risch HA, Anton-Culver H, Ziogas A, Menon U, Gayther SA, Gentry-Maharaj A, Ramus SJ, Wu AH, Pearce CL, Lee AW, Pike MC, Kupryjanczyk J, Podgorska A, Plisiecka-Halasa J, Sawicki W, Goode EL, Berchuck A, Ovarian Cancer Association C. rs495139 in the TYMS-ENOSF1 Region and Risk of Ovarian Carcinoma of Mucinous Histology. Int J Mol Sci. 2018;19(9). Epub 2018/08/24. doi: 10.3390/ijms19092473. PubMed PMID: 30134598; PMCID: PMC6163881.
Liu G, Mukherjee B, Lee S, Lee AW, Wu AH, Bandera EV, Jensen A, Rossing MA, Moysich KB, Chang-Claude J, Doherty JA, Gentry-Maharaj A, Kiemeney L, Gayther SA, Modugno F, Massuger L, Goode EL, Fridley BL, Terry KL, Cramer DW, Ramus SJ, Anton-Culver H, Ziogas A, Tyrer JP, Schildkraut JM, Kjaer SK, Webb PM, Ness RB, Menon U, Berchuck A, Pharoah PD, Risch H, Pearce CL, Ovarian Cancer Association C. Robust Tests for Additive Gene-Environment Interaction in Case-Control Studies Using Gene-Environment Independence. American Journal of Epidemiology. 2018;187(2):366-77. Epub 2017/06/22. doi: 10.1093/aje/kwx243. PubMed PMID: 28633381; PMCID: PMC5860584.
Madsen MJ, Knight S, Sweeney C, Factor R, Salama M, Stijleman IJ, Rajamanickam V, Welm BE, Arunachalam S, Jones B, Rachamadugu R, Rowe K, Cessna MH, Thomas A, Kushi LH, Caan BJ, Bernard PS, Camp NJ. Reparameterization of PAM50 Expression Identifies Novel Breast Tumor Dimensions and Leads to Discovery of a Genome-Wide Significant Breast Cancer Locus at 12q15. Cancer Epidemiol Biomarkers Prev. 2018;27(6):644-52. Epub 2018/04/14. doi: 10.1158/1055-9965.EPI-17-0887. PubMed PMID: 29650789; PMCID: 5984724.
O'Mara TA, Glubb DM, Amant F, Annibali D, Ashton K, Attia J, Auer PL, Beckmann MW, Black A, Bolla MK, Brauch H, Brenner H, Brinton L, Buchanan DD, Burwinkel B, Chang-Claude J, Chanock SJ, Chen C, Chen MM, Cheng THT, Clarke CL, Clendenning M, Cook LS, Couch FJ, Cox A, Crous-Bous M, Czene K, Day F, Dennis J, Depreeuw J, Doherty JA, Dork T, Dowdy SC, Durst M, Ekici AB, Fasching PA, Fridley BL, Friedenreich CM, Fritschi L, Fung J, Garcia-Closas M, Gaudet MM, Giles GG, Goode EL, Gorman M, Haiman CA, Hall P, Hankison SE, Healey CS, Hein A, Hillemanns P, Hodgson S, Hoivik EA, Holliday EG, Hopper JL, Hunter DJ, Jones A, Krakstad C, Kristensen VN, Lambrechts D, Marchand LL, Liang X, Lindblom A, Lissowska J, Long J, Lu L, Magliocco AM, Martin L, McEvoy M, Meindl A, Michailidou K, Milne RL, Mints M, Montgomery GW, Nassir R, Olsson H, Orlow I, Otton G, Palles C, Perry JRB, Peto J, Pooler L, Prescott J, Proietto T, Rebbeck TR, Risch HA, Rogers PAW, Rubner M, Runnebaum I, Sacerdote C, Sarto GE, Schumacher F, Scott RJ, Setiawan VW, Shah M, Sheng X, Shu XO, Southey MC, Swerdlow AJ, Tham E, Trovik J, Turman C, Tyrer JP, Vachon C, VanDen Berg D, Vanderstichele A, Wang Z, Webb PM, Wentzensen N, Werner HMJ, Winham SJ, Wolk A, Xia L, Xiang YB, Yang HP, Yu H, Zheng W, Pharoah PDP, Dunning AM, Kraft P, De Vivo I, Tomlinson I, Easton DF, Spurdle AB, Thompson DJ. Identification of nine new susceptibility loci for endometrial cancer. Nat Commun. 2018;9(1):3166. Epub 2018/08/11. doi: 10.1038/s41467-018-05427-7. PubMed PMID: 30093612; PMCID: PMC6085317.
Peres LC, Cushing-Haugen KL, Anglesio M, Wicklund K, Bentley R, Berchuck A, Kelemen LE, Nazeran TM, Gilks CB, Harris HR, Huntsman DG, Schildkraut JM, Rossing MA, Kobel M, Doherty JA. Histotype classification of ovarian carcinoma: A comparison of approaches. Gynecol Oncol. 2018;151(1):53-60. Epub 2018/08/20. doi: 10.1016/j.ygyno.2018.08.016. PubMed PMID: 30121132; PMCID: PMC6292681.
Peres LC, Risch H, Terry KL, Webb PM, Goodman MT, Wu AH, Alberg AJ, Bandera EV, Barnholtz-Sloan J, Bondy ML, Cote ML, Funkhouser E, Moorman PG, Peters ES, Schwartz AG, Terry PD, Manichaikul A, Abbott SE, Camacho F, Jordan SJ, Nagle CM, Australian Ovarian Cancer Study G, Anne Rossing M, Doherty JA, Modugno F, Moysich K, Ness R, Berchuck A, Cook L, Le N, Brooks-Wilson A, Sieh W, Whittemore A, McGuire V, Rothstein J, Anton-Culver H, Ziogas A, Pearce CL, Tseng C, Pike M, Schildkraut JM, African American Cancer Epidemiology S, the Ovarian Cancer Association C. Racial/ethnic differences in the epidemiology of ovarian cancer: a pooled analysis of 12 case-control studies. International journal of epidemiology. 2018;47(3):1011. Epub 2018/03/28. doi: 10.1093/ije/dyy054. PubMed PMID: 29584862; PMCID: PMC6005044.
Rambau PF, Vierkant RA, Intermaggio MP, Kelemen LE, Goodman MT, Herpel E, Pharoah PD, Kommoss S, Jimenez-Linan M, Karlan BY, Gentry-Maharaj A, Menon U, Polo SH, Candido Dos Reis FJ, Doherty JA, Gayther SA, Sharma R, Larson MC, Harnett PR, Hatfield E, de Andrade JM, Nelson GS, Steed H, Schildkraut JM, Carney ME, Hogdall E, Whittemore AS, Widschwendter M, Kennedy CJ, Wang F, Wang Q, Wang C, Armasu SM, Daley F, Coulson P, Jones ME, Anglesio MS, Chow C, de Fazio A, Garcia-Closas M, Brucker SY, Cybulski C, Harris HR, Hartkopf AD, Huzarski T, Jensen A, Lubinski J, Oszurek O, Benitez J, Mina F, Staebler A, Taran FA, Pasternak J, Talhouk A, Rossing MA, Hendley J, Group A, Edwards RP, Fereday S, Modugno F, Ness RB, Sieh W, El-Bahrawy MA, Winham SJ, Lester J, Kjaer SK, Gronwald J, Sinn P, Fasching PA, Chang-Claude J, Moysich KB, Bowtell DD, Hernandez BY, Luk H, Behrens S, Shah M, Jung A, Ghatage P, Alsop J, Alsop K, Garcia-Donas J, Thompson PJ, Swerdlow AJ, Karpinskyj C, Cazorla-Jimenez A, Garcia MJ, Deen S, Wilkens LR, Palacios J, Berchuck A, Koziak JM, Brenton JD, Cook LS, Goode EL, Huntsman DG, Ramus SJ, Kobel M. Association of p16 expression with prognosis varies across ovarian carcinoma histotypes: an Ovarian Tumor Tissue Analysis consortium study. J Pathol Clin Res. 2018;4(4):250-61. Epub 2018/08/01. doi: 10.1002/cjp2.109. PubMed PMID: 30062862; PMCID: PMC6174617.
Rosenberger A, Hung RJ, Christiani DC, Caporaso NE, Liu G, Bojesen SE, Le Marchand L, Haiman CA, Albanes D, Aldrich MC, Tardon A, Fernandez-Tardon G, Rennert G, Field JK, Kiemeney B, Lazarus P, Haugen A, Zienolddiny S, Lam S, Schabath MB, Andrew AS, Brunnsstom H, Goodman GE, Doherty JA, Chen C, Teare MD, Wichmann HE, Manz J, Risch A, Muley TR, Johansson M, Brennan P, Landi MT, Amos CI, Pesch B, Johnen G, Bruning T, Bickeboller H, Gomolka M. Genetic modifiers of radon-induced lung cancer risk: a genome-wide interaction study in former uranium miners. Int Arch Occup Environ Health. 2018;91(8):937-50. Epub 2018/07/05. doi: 10.1007/s00420-018-1334-3. PubMed PMID: 29971594; PMCID: PMC6375683.
Ugai T, Kelemen LE, Mizuno M, Ong JS, Webb PM, Chenevix-Trench G, Australian Ovarian Cancer Study G, Wicklund KG, Doherty JA, Rossing MA, Thompson PJ, Wilkens LR, Carney ME, Goodman MT, Schildkraut JM, Berchuck A, Cramer DW, Terry KL, Cai H, Shu XO, Gao YT, Xiang YB, Van Den Berg D, Pike MC, Wu AH, Pearce CL, Matsuo K, Ovarian Cancer Association C. Ovarian cancer risk, ALDH2 polymorphism and alcohol drinking: Asian data from the Ovarian Cancer Association Consortium. Cancer Sci. 2018;109(2):435-45. Epub 2017/12/17. doi: 10.1111/cas.13470. PubMed PMID: 29247577; PMCID: PMC5797830.
Contact Us
Utah Cancer Registry
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Email: ucr.info@hsc.utah.edu