USeq is a collection of over 180 command line java applications for analyzing next generation sequencing data from ChIP-Seq, RNA-Seq, and Methyl-Seq experiments. It contains a variety of utilities for intraconverting between file formats, working with SAM/BAM files, and visualizing data in genome browsers. It is developed by members of the Cancer Bioinformatics (CBI) Shared Resource.
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Who to contact for questions on these issues:
- GitHub Issues for bugs, feature requests, help, etc.