USeq

USeq is a collection of over 180 command line java applications for analyzing next generation sequencing data from ChIP-Seq, RNA-Seq, and Methyl-Seq experiments. It contains a variety of utilities for intraconverting between file formats, working with SAM/BAM files, and visualizing data in genome browsers. It is developed by members of the Bioinformatics Shared Resource.

Links

Who to contact for questions on these issues:

Contact Us

Bioinformatic Analysis Director
David Nix, PhD
david.nix@hci.utah.edu
801-587-4611

Bioinformatic Analysis Associate Director
Timothy Parnell, PhD
timothy.parnell@hci.utah.edu
801-587-4312

Governance

HCI Senior Director Oversight
Alana Welm, PhD

Faculty Advisory Committee Chair
Katherine Varley, PhD

Faculty Advisory Committee Members
Richard Clark, PhD
Jason Gertz, PhD
Christopher Gregg, PhD
Philip Moos, PhD
Sean Tavtigian, PhD
Katherine Varley, PhD
Joseph Yost, PhD